SNP Profiles matching IMC 38

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	CC	CC	TT	CC	GG	AC	CG	AG	TT	AG	GG	AA	CC
1._RUQ_1599	TT	CC	CC	TT	CC	GG	AC	CG	AG	TT	AG	GG	AA	CC
2._RUQ_1676	TT	CC	CC	TT	CT	GG	AC	GG	AG	CT	AG	GG	AA	CC
3._RUQ_1617	TT	CC	AC	TT	CC	GG	AC	GG	AG	CT	AG	GG	AA	CC

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CC	CT	GT	GG	AA	CT	CC	TT	GG	GG	TT	AA	CC
1._RUQ_1599	AA	CC	CT	GT	GG	AA	CT	CC	TT	GG	GG	TT	AA	CC
2._RUQ_1676	AA	CC	CT	GT	GG	AA	CC	CC	TT	GG	GG	TT	AC	CC
3._RUQ_1617	AA	CC	CT	GG	CG	AA	CT	CC	TT	GG	GG	TT	AC	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CC	TT	GG	AA	CC	CC	GG	GG	TT	GG	TT	CC	TT	CG
1._RUQ_1599	CC	-	GG	AA	CC	CC	GG	GG	TT	GG	TT	CC	TT	CG
2._RUQ_1676	CC	TT	-	AA	CC	CC	GG	GG	TT	GG	TT	CC	TT	CG
3._RUQ_1617	CC	TT	GG	AA	CC	CT	GG	GG	TT	GG	CT	CC	TT	CG

	43
_Input profile	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._RUQ_1599	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._RUQ_1676	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._RUQ_1617	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: IMC_38 RUQ_1628

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._EBC_148 RUQ_1599

identical
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

2._LP_4_/20_[POU] RUQ_1676

94 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

3._IMC_60 RUQ_1617

90.7 %
43 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP899	32	TcSNP998	33	TcSNP999	34	TcSNP1060	35	TcSNP1063
36	TcSNP1111	37	TcSNP1126	38	TcSNP1253	39	TcSNP1309	40	TcSNP1439
41	TcSNP1442	42	TcSNP1458	43	TcSNP1484